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Get cell score and location information as a data.frame

Source: R/80_get_cs_in_situ.r
getCellScoresInSitu.Rd

Get cell score and location information as a data.frame

Usage

getCellScoresInSitu(object, sigmaValueChoice, ccIndex = 1)

# S4 method for class 'CoProSingle'
getCellScoresInSitu(object, sigmaValueChoice, ccIndex = 1)

# S4 method for class 'CoProMulti'
getCellScoresInSitu(object, sigmaValueChoice, ccIndex = 1)

Arguments

object

A CoPro object

sigmaValueChoice

A value to specify the sigma squared to use for selecting the particular cell score information

ccIndex

Canonical vector index, default = 1

Value

A data.frame object with cell scores and their locations