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Count number of paired insertions in each peak

Source: R/PIC_function.R
count_peaks.Rd

Count number of paired insertions in each peak

Usage

count_peaks(
  peak_sets,
  filtered_fragments,
  extend_size,
  n_features = length(peak_sets)
)

Arguments

peak_sets

GRanges object of peak sets

filtered_fragments

filtered fragment also as a GRanges object

extend_size

How long should we extend the exact insertion site as accessible window

n_features

Number of features (peaks)

Value

A sparse vector of PIC for each peak